Accession number Representative sample ( s ) used

Albert [1] GSE55400 BY FP Artieri [2] GSE50049 non multiplexed Artieri [3] SRP033885 Mixed parental ribosome protected fragments replicate 1 Brar [4] GSE34082 footprints for exponential vegetative cells of the strain gb15 used for the traditional timecourse Dunn [5] obtained from authors only one sample Gardin [6] GSE51164 ribosome footprints for wildtype Gerashchenko (NAR) [7] GSE59573 many samples used Gerashchenko (PNAS) [8] obtained from authors Initial rep2 foot Guydosh [9] GSE52968 wild-type CHX (note: CHX here refers to lysis buffer, not pretreatment) Ingolia [10] GSE13750 Footprints-rich-1 Ours TBD WT 2 FP Jan [11] GSE61012 sec63mVenusBirA +CHX 7minBiotin input (CHX) sec63mVenusBirA -CHX 7minBiotin input (no CHX) Lareau [12] GSE58321 Cycloheximide replicate 1 (CHX) Untreated replicate 1 (no CHX) Mcmanus [13] GSE52119 S. cerevisiae Ribo-seq Rep 1 Nedialkova [14] GSE67387 WT ribo YPD rep1 (CHX) WT ribo YPD noCHX rep2 (no CHX) Pop [15] GSE63789 WT footprint Sen [16] GSE66411 ribo wild-type TIF1 replicate 1 30 deg Weinberg GSE53268 Cerevisiae RPF Williams [17] GSE61011 Om45mVenusBirA +CHX 2minBiotin input (CHX) Om45mVenusBirA -CHX 2minBiotin input (no CHX) Young [18] GSE69414 wild-type Zinshteyn [19] GSE45366 WT Ribosome Footprint 1